2022
29. Guérin N., Ciccarella M., Flamant E., Frémont P., Mangenot S., Istace B., Noel B., Belser C., Bertrand L., Labadie K., Cruaud C., Romac S., Bachy C., Gachenot M., Pelletier E., Alberti A., Jaillon O., Wincker P., Aury JM. et Carradec Q. (2022) Genomic Adaptation of the Picoeukaryote Pelagomonas Calceolata to Iron-Poor Oceans Revealed by a Chromosome-Scale Genome Sequence. Communications Biology, 5(1): 983. PDF – Link
28. Needham DM., Poirier C., Bachy C., George EE., Wilken S., Yung CM., Limardo AJ., Morando Michael, Sudek L, Malmstrom RR., Keeling PJ., Santoro AE. and Worden AZ. (2022) The Microbiome of a Bacterivorous Marine Choanoflagellate Contains a Resource-Demanding Obligate Bacterial Associate. Nature Microbiology, https://doi.org/10.1038/s41564-022-01174-0. PDF – Link
27. Bachy C., Wittmers F., Muschiol J., Hamilton M., Henrissat B., Worden AZ. (2022) The Land–Sea Connection: Insights Into the Plant Lineage from a Green Algal Perspective. Annual Review of Plant Biology, 73:1. Link
26. Bachy C., Sudek L., Choi C.J., Eckmann C.A., Nöthig E.-M., Metfies K. & Worden A.Z. (2022) Phytoplankton Surveys in the Arctic Fram Strait Demonstrate the Tiny Eukaryotic Alga Micromonas and Other Picoprasinophytes Contribute to Deep Sea Export. Microorganisms, 10, 961. PDF – Link
25. Bachy C., Hehenberger E., Ling YC., Needham DM., Strauss J., Wilken S & Worden AZ. (2022). Marine Protists: A Hitchhiker’s Guide to their Role in the Marine Microbiome. In: Stal, L.J., Cretoiu, M.S. (eds) The Marine Microbiome. The Microbiomes of Humans, Animals, Plants, and the Environment, vol 3. Springer, Cham. Link
2021
24. Hamilton M, Mascioni M., Hehenberger E., Bachy C., Yung CCM, Vernet M. & Worden AZ (2021) Spatiotemporal variations in Antarctic protistan communities highlight phytoplankton diversity and seasonal dominance by a novel cryptophyte lineage. mBio. PDF – Link
23. Bachy C, Yung CCM, Needham DM, Gazitúa MC, Roux S, Limardo AJ, Choi CJ, Jorgens DM, Sullivan MB & Worden AZ (2021) Viruses infecting a warm water picoeukaryote shed light on spatial co-occurrence dynamics of marine viruses and their hosts. ISME Journal. PDF – Link
2020
22. Choi CJ, Jimenez V, Needham DM, Poirier C, Bachy C, Alexander H, Wilken S, Chavez PC, Sudek S, Giovannoni SJ, Worden AZ (2020) Seasonal and Geographical Transitions in Eukaryotic Phytoplankton Community Structure in the Atlantic and Pacific Oceans. Frontiers in Microbiology. PDF – Link
2019
21. Needham DM, Yoshizawa S, Hosaka T, Poirier C, Choi CJ, Hehenberger E, Irwin NAT, Wilken S,Yung CM, Bachy C, Kurihara R, Nakajima Y, Kojima K, Kimura-Someya T, Leonard G, Malmstrom RR, Mende DR, Olson DK, Sudo Y, Sudek S, Richards TA, DeLong EF, Keeling PJ, Santoro AE, Shirouzu M, Iwasaki W, Worden AZ (2019) A Distinct Lineage of Giant Viruses Brings a Rhodopsin Photosystem to Unicellular Marine Predators. Proceedings of the National Academy of Sciences. PDF – Link
20. Zimmerman AE, Bachy C, Ma X, Roux S, Jang HB, Sullivan MB, Waldbauer JR, Worden AZ (2019) Closely Related Viruses of the Marine Picoeukaryotic Alga Ostreococcus Lucimarinus Exhibit Different Ecological Strategies. Environmental Microbiology, 21(6): 2148–2170. PDF – Link
19. Kashiyama Y, Yokoyama A, Shiratori T, Hess S, Not F, Bachy C, Gutierrez-Rodriguez A, et al. (2019) Taming Chlorophylls by Early Eukaryotes Underpinned Algal Interactions and the Diversification of the Eukaryotes on the Oxygenated Earth. The ISME Journal, 13(8): 1899–1910. PDF – Link
2018
18. Bachy C, Charlesworth CJ, Chan AM, Finke JF, Wong CH, Wei CL, Sudek S, Coleman ML, Suttle CA, Worden AZ (2018) Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions. Environmental Microbiology, 20(8): 2898‑2912. PDF – Link
17. Villar E, Dani V, Bigeard E, Linhart T, Mendez-Sandin M, Bachy C, Six C, Lombard F, Sabourault C, Not F (2018) Symbiont Chloroplasts Remain Active During Bleaching-Like Response Induced by Thermal Stress in Collozoum Pelagicum (Collodaria, Retaria). Frontiers in Marine Science. PDF – Link
16. Guo J, Wilken S, Jimenez V, Choi CJ, Ansong CK, Dannebaum R, Sudek L, Milner D, Bachy C, Reistetter EN, Elrod VA, Klimov D, Purvine SO, Wei CL, Ramamoorthy GK, Richards TA, Goodenough U, Smith RD, Callister SJ, Worden AZ (2018) Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation. Nature Microbiology (7): 781‑90. PDF – Link
2017
15. Choi CJ*, Bachy C*, Spiro Jaeger G, Poirier C, Sudek L, Sarma V.V.S.S., Mahadevan A, Giovannoni SJ, Worden AZ. (2017) Newly Discovered Deep-Branching Marine Plastid Lineages Are Numerically Rare but Globally Distributed. Current Biology 27(1):R15-16. PDF – Link
14. Caron DA, Alexander H, Allen AE, Archibald JM, Armbrust EV, Bachy C, Bell CJ, et al. (2017) Probing the Evolution, Ecology and Physiology of Marine Protists Using Transcriptomics. Nature Reviews Microbiology 15(1):6-20. PDF – Link
2016
13. Van Baren MJ, Bachy C, Reistetter E, Purvine SO, Grimwood J, Sudek S, Yu H, Poirier C, Deerinck TJ, Kuo A, Grigoriev IV, Wong CH, Smith RD, Callister SJ, Wei CL, Schmutz J, Worden AZ (2016) Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants. BMC Genomics 17:267. PDF – Link
12. Santoferrara LF, Bachy C, Alder VA, Gong J, Kim YO, Saccà A, da Silva Neto ID, et al. (2016) Updating Biodiversity Studies in Loricate Protists: The Case of the Tintinnids (Alveolata, Ciliophora, Spirotrichea). Journal of Eukaryotic Microbiology 63(5):651-6. PDF – Link
2015
11. Simmons M*, Bachy C*, Sudek S, van Baren MJ, Sudek L, Ares M, Worden AZ (2015) Intron invasions trace algal speciation and reveal nearly identical Arctic and Antarctic Micromonas populations. Molecular Biology and Evolution 32 (9): 2219-2235. PDF – Link
10. Dunthorn M, Lipps JH, Dolan JR, Saab MAA, Aescht E, Bachy C et al. (2015) Ciliates—Protists with complex morphologies and ambiguous early fossil record. Marine Micropaleontology 119:1-6. PDF – Link
2014
9. Duanmu D*, Bachy C*, Sudek S, Wong CH, Jimenez V, Rockwell NC, Martin SS, Ngan CY, Reistetter E, van Baren MJ, Price DC, Wei CL, Reyes-Prieto A, Lagarias JC, Worden AZ (2014) Marine Algae and Land Plants Share Conserved Phytochrome Signaling Systems. Proceedings of the National Academy of Sciences 111(44):15827–15832. PDF – Link
8. Bachy C and Alexandra Z. Worden (2014) Microbial Ecology: Finding Structure in the Rare Biosphere. Current Biology 24(8): R315-17. PDF – Link
7. Rockwell NC, Duanmu D, Martin SS, Bachy C, Price DC, Bhattacharya D., Worden AZ, Lagarias JC (2014) Eukaryotic algal phytochromes span the visible spectrum. Proceedings of the National Academy of Sciences 111(10):3871–3876. PDF – Link
6. Dolan JR, Pierce RW, Bachy C (2014) Cyttarocylis ampulla, a Polymorphic Tintinnid Ciliate of the Marine Plankton. Protist 165(1): 66–80. PDF – Link
5. Bachy C, Moreira D, Dolan JR, López-García P (2014) Seasonal dynamics of free-living tintinnid ciliate communities revealed by environmental sequences from the North-West Mediterranean Sea. FEMS microbiology ecology 87(2):330-342. PDF – Link
2013
4. Bachy C, Dolan JR, López-García P, Deschamps P, Moreira D (2013) Accuracy of protist diversity assessments: morphology compared to cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study. ISME Journal 7(2) :244-255. PDF – Link
2012
3. Bachy C, Gómez F, López-García P, Dolan JR, Moreira D (2012) Molecular Phylogeny of Tintinnid Ciliates (Tintinnida, Ciliophora). Protist 163(6) : 873-887. PDF – Link
2011
2. Bachy C, López-García P, Vereshchaka A, Moreira D (2011) Diversity and vertical distribution of microbial eukaryotes in the snow, sea ice and seawater near the North Pole at the end of the polar night. Frontiers in Microbiology 2. PDF – Link
2010
1. Grimsley N, Pequin B, Bachy C, Moreau H, Piganeau G (2010) Cryptic sex in the smallest eukaryotic marine green alga. Molecular Biology and Evolution 27(1):47-54. PDF – Link
* These authors contributed equally